Public Archive

This is the public archive with unique ID YXJjaGl2ZS1McldVYkU= .
The user-supplied meta data and files are available below.

Archive Meta Data

Owner: /C=DK/ST=NA/L=NA/O=SNM/OU=NA/CN=Shyam Gopalakrishnan/emailAddress=shyam@snm.ku.dk
Name: SingleTube
Description: Raw sequencing data for the comparison of library build methods. This data is used in the article Title: Single-tube library preparation for degraded DNA Journal: Methods in Ecology and Evolution Authors: Carøe C, Gopalakrishnan S, Vinner L, Mak S S, Strander Sinding M H, Samaniego J A, Wales N, Sicheritz-Pontén T, Gilbert M T. Abstract: Single-tube library preparation methods for the Illumina platform show promising results using degraded DNA as template. The results show that use of the single tube format can bring down labour and reagent cost dramatically while simultaneously giving high quality data for degraded DNA. The results demonstrate both efficiency, economic and time benefits when applying single-tube library construction methods to degraded DNA samples. These methods may be of considerable interest to fields related to degraded DNA. Contact Information: christiancaroe@gmail.com, shyam.g@gmail.com Details on the files in the archive. Each of the fastq.gz files corresponds to a sample prepared using a different library preparation method. Note that there can be multiple fastq.gz files that all correspond to the same sample+library preparation method. The filename is of the form: TOG_MMMMMMM_SSSS_CCCCCC_L0XX_R1_0YY.fastq.gz where, MMMMMMM is the library preparation method, and is one of "ANMY_ATDC3", "ANMY_BEST_V3", "XL7V_6070" and "XL7V_Ultra". SSSS is the sample number, and is one of 1239, 1766, 1921, 2044, 2045, 2047, 214 and 3134. CCCCCC is the 6 letter index code. XX is the lane number on the flowcell. YY is the part of the fastq.gz, i.e., each large fastq is broken up into many smaller chunks, and these are labeled, starting from 001, 002 and so on.
Date: 2017-08-08 11:23:00.549138

Archive Files

DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1921_TGTGAC_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1239_GTGTAT_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_3134_CGCTAT_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_214_TGCATA_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1921_TGTGAC_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2047_ACATAC_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2045_CGTATA_L005_R1_006.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2047_CTATCA_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1766_TGATCG_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_3134_CGCTAT_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1239_CGATGA_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1766_TGATCG_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2047_CTATCA_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1921_TGAACA_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2047_ACATAC_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_214_GTATCT_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_3134_CGCTAT_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2044_TCTCGC_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1766_AGCATG_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2045_TGAGCC_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1921_TGTGAC_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_214_GTATCT_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2045_CGTATA_L005_R1_007.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1766_AGCATG_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1239_GTGTAT_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2044_CAGCTA_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2045_TGAGCC_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1766_AGCATG_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2047_ACATAC_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_214_GTATCT_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1766_AGCATG_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2044_CAGCTA_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1921_TGAACA_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1766_AGCATG_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1766_TGATCG_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2044_CAGCTA_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_3134_CGCTAT_L004_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2045_CGTATA_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1239_CGATGA_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2047_ACATAC_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1766_TGATCG_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2045_TGAGCC_L004_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1766_AGCATG_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2045_CGTATA_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_214_GTATCT_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2045_TGAGCC_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_3134_TAGATG_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_214_TGCATA_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2044_TCTCGC_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1921_TGAACA_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_214_TGCATA_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1766_TGATCG_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1921_TGTGAC_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1766_TGATCG_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1921_TGAACA_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_3134_CGCTAT_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2044_TCTCGC_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_3134_TAGATG_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1766_AGCATG_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1921_TGTGAC_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_214_TGCATA_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1239_GTGTAT_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_3134_TAGATG_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2047_ACATAC_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1921_TGAACA_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2047_CTATCA_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_3134_CGCTAT_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2044_CAGCTA_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_214_TGCATA_L005_R1_006.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2047_ACATAC_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1921_TGTGAC_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_3134_CGCTAT_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1239_GTGTAT_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1239_GTGTAT_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2045_CGTATA_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1766_AGCATG_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_214_TGCATA_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_214_TGCATA_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2047_CTATCA_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2045_TGAGCC_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2047_ACATAC_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_214_TGCATA_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2044_CAGCTA_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2044_TCTCGC_L005_R1_007.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_214_GTATCT_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2047_CTATCA_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2045_CGTATA_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2047_CTATCA_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2045_TGAGCC_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2044_TCTCGC_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2045_CGTATA_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1239_CGATGA_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2044_TCTCGC_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2045_CGTATA_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1239_GTGTAT_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2044_TCTCGC_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2047_CTATCA_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2044_TCTCGC_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2044_TCTCGC_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_214_TGCATA_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1239_CGATGA_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_214_TGCATA_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2044_CAGCTA_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_214_GTATCT_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2047_ACATAC_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2044_TCTCGC_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2044_CAGCTA_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1239_CGATGA_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2045_TGAGCC_L005_R1_006.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2045_TGAGCC_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_1239_GTGTAT_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2045_TGAGCC_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1239_CGATGA_L005_R1_005.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2045_CGTATA_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1239_CGATGA_L004_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1921_TGTGAC_L005_R1_006.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_3134_TAGATG_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2045_TGAGCC_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_3134_TAGATG_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_214_GTATCT_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1921_TGTGAC_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_2044_CAGCTA_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_2045_CGTATA_L005_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1921_TGTGAC_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_1239_CGATGA_L005_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_ATDC3_3134_CGCTAT_L005_R1_002.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1921_TGAACA_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_1239_CGATGA_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1239_GTGTAT_L004_R1_003.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1239_GTGTAT_L004_R1_004.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_3134_TAGATG_L005_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_6070_1921_TGAACA_L004_R1_001.fastq.gz
DataForLibraryComparisonPaper/TOG_ANMY_BEST_V3_2044_TCTCGC_L005_R1_006.fastq.gz
DataForLibraryComparisonPaper/TOG_XL7V_Ultra_2045_TGAGCC_L004_R1_004.fastq.gz